Example i55: Generate Varying Excitation Curve for 3D Cylinder from Example_i56

This example illustrates how to generate a fully varying ipmatc file for example_i56. This is used for gastrointestinal modelling when wanting to produce varying excitation curves per the Aliev cell model. An additional perl scrip called insert_ipmatc.pl and the file ICCcmiss_mono_ref.ipmatc have been included since both of them are used to create the final ipmatc file, here called ICCcmiss_mono.ipmatc, for use in the simulations. This is produced by executing perl insert_ipmatc.pl

The epsilon curve placed on the cylinder showing the variance from the botton to the top.

Epsilon Curve varying from Botton to Top

The comfile run by this example is as follows:

$LAYER = 2;


# Define the geometry.
gfx read node $example/domain.exnode
gfx read elem $example/domain.exelem
gfx read elem $example/potential.exelem
gfx read elem $example/grid.exelem


# Define the curves.
open com $example/xi1.curve.com exec
open com $example/xi2.curve.com exec
open com $example/xi3.curve.com exec


# Group the different layers.
gfx create egroup LM add 13..16,29..32
gfx create egroup ICC add 21..24
gfx create egroup CM add 1..4,17..20,9..12,25..28,5..8

if($LAYER == 1) {
  $SEED_ELEMENT = 13;
  $GROUP = "LM";
} elsif($LAYER == 2) {
  $SEED_ELEMENT = 21;
  $GROUP = "ICC";
} elsif($LAYER == 3) {
  $SEED_ELEMENT = 1;
  $GROUP = "CM";
}

# Define the curves on the layer.
gfx define field xi_texture xi_texture_coordinates seed_element $SEED_ELEMENT
gfx define field xi1_curve curve_lookup curve xi1 source xi_texture.1
gfx define field xi2_curve curve_lookup curve xi2 source xi_texture.2
gfx define field xi3_curve curve_lookup curve xi3 source xi_texture.3
gfx define field temp multiply fields xi1_curve xi2_curve
gfx define field values multiply fields temp xi3_curve


# Calculate "values" and store them.
gfx evaluate egroup $GROUP destination potential source values
gfx write elem values_$GROUP group $GROUP fields potential
gfx write elem number_$GROUP group $GROUP fields grid_point_number


# Write the values to $GROUP.txt.
open com $example/parse_grid.com exec
parse_grid( $GROUP );


# Delete files.
unlink( "number_$GROUP.exelem" );
unlink( "values_$GROUP.exelem" );

Files used by this example are:

Name                      Modified     Size

example_i55.com           07-Jul-2006  1.5k
ICCcmiss_mono_ref.ipmatc  07-Jul-2006  2.4k
domain.exelem             07-Jul-2006   84k
domain.exnode             07-Jul-2006   48k
grid.exelem               07-Jul-2006  798k
insert_ipmatc.pl          07-Jul-2006  515 
parse_grid.com            07-Jul-2006  1.9k
potential.exelem          07-Jul-2006  1.0M
xi1.curve.com             07-Jul-2006  146 
xi1.curve.exelem          07-Jul-2006  622 
xi1.curve.exnode          07-Jul-2006  359 
xi2.curve.com             07-Jul-2006  147 
xi2.curve.exelem          07-Jul-2006  622 
xi2.curve.exnode          07-Jul-2006  359 
xi3.curve.com             07-Jul-2006  143 
xi3.curve.exelem          07-Jul-2006  622 
xi3.curve.exnode          07-Jul-2006  359 

Download the entire example:

Name                      Modified     Size

examples_i_i5_i55.tar.gz  19-Aug-2006  291k

Testing status by version:

Testing status by file:

• cmiss_test.log
  

  i686-linux
  Success	cmgui:	cmiss_test.log.retain.
  Success	cmgui-debug:	cmiss_test.log.retain.
  Success	cmgui-debug-memorycheck:	cmiss_test.log.retain.
  Success	cmgui-debug-valgrind:	cmiss_test.log.retain.
  Success	cmgui-motif:	cmiss_test.log.retain.
  Success	cmgui-motif-debug:	cmiss_test.log.retain.
  Success	cmgui-motif-debug-memorycheck:	cmiss_test.log.retain.
  Success	cmgui-motif-debug-valgrind:	cmiss_test.log.retain.
  Success	cmgui-wx:	cmiss_test.log.retain.
  Success	cmgui-wx-debug:	cmiss_test.log.retain.
  Success	cmgui-wx-debug-memorycheck:	cmiss_test.log.retain.
  Success	cmgui-wx-debug-valgrind:	cmiss_test.log.retain.
  mips-irix
  Success	cmgui:	cmiss_test.log.retain.
  Success	cmgui-debug:	cmiss_test.log.retain.
  Success	cmgui-debug-memorycheck:	cmiss_test.log.retain.
  Success	cmgui-motif:	cmiss_test.log.retain.
  Success	cmgui-motif-debug:	cmiss_test.log.retain.
  Success	cmgui-motif-debug-memorycheck:	cmiss_test.log.retain.
  Success	cmgui64:	cmiss_test.log.retain.
  Success	cmgui64-motif:	cmiss_test.log.retain.
  rs6000-aix
  Success	cmgui:	cmiss_test.log.retain.
  Success	cmgui-debug:	cmiss_test.log.retain.
  Success	cmgui-motif:	cmiss_test.log.retain.
  Success	cmgui-motif-debug:	cmiss_test.log.retain.
  x86_64-linux
  Success	cmgui:	cmiss_test.log.retain.
  Success	cmgui-debug:	cmiss_test.log.retain.
  Success	cmgui-debug-memorycheck:	cmiss_test.log.retain.
  Success	cmgui-motif:	cmiss_test.log.retain.
  Success	cmgui-motif-debug:	cmiss_test.log.retain.
  Success	cmgui-motif-debug-memorycheck:	cmiss_test.log.retain.
  Success	cmgui-wx:	cmiss_test.log.retain.
  Success	cmgui-wx-debug:	cmiss_test.log.retain.
  Success	cmgui-wx-debug-memorycheck:	cmiss_test.log.retain.
  Success	cmgui-wx-debug-valgrind:	cmiss_test.log.retain.
  Success	cmgui-wx-gcc-cad-debug:	cmiss_test.log.retain.

  
  
• ICC.txt
  

  i686-linux
  Success	cmgui:	ndiff test: no significant differences with generic answer.
  Success	cmgui-debug:	ndiff test: no significant differences with generic answer.
  Success	cmgui-debug-memorycheck:	ndiff test: no significant differences with generic answer.
  Success	cmgui-debug-valgrind:	ndiff test: no significant differences with generic answer.
  Success	cmgui-motif:	ndiff test: no significant differences with generic answer.
  Success	cmgui-motif-debug:	ndiff test: no significant differences with generic answer.
  Success	cmgui-motif-debug-memorycheck:	ndiff test: no significant differences with generic answer.
  Success	cmgui-motif-debug-valgrind:	ndiff test: no significant differences with generic answer.
  Success	cmgui-wx:	ndiff test: no significant differences with generic answer.
  Success	cmgui-wx-debug:	ndiff test: no significant differences with generic answer.
  Success	cmgui-wx-debug-memorycheck:	ndiff test: no significant differences with generic answer.
  Success	cmgui-wx-debug-valgrind:	ndiff test: no significant differences with generic answer.
  mips-irix
  Success	cmgui:	ndiff test: no significant differences with generic answer.
  Success	cmgui-debug:	ndiff test: no significant differences with generic answer.
  Success	cmgui-debug-memorycheck:	ndiff test: no significant differences with generic answer.
  Success	cmgui-motif:	ndiff test: no significant differences with generic answer.
  Success	cmgui-motif-debug:	ndiff test: no significant differences with generic answer.
  Success	cmgui-motif-debug-memorycheck:	ndiff test: no significant differences with generic answer.
  Success	cmgui64:	ndiff test: no significant differences with generic answer.
  Success	cmgui64-motif:	ndiff test: no significant differences with generic answer.
  rs6000-aix
  Success	cmgui:	ndiff test: no significant differences with generic answer.
  Success	cmgui-debug:	ndiff test: no significant differences with generic answer.
  Success	cmgui-motif:	ndiff test: no significant differences with generic answer.
  Success	cmgui-motif-debug:	ndiff test: no significant differences with generic answer.
  x86_64-linux
  Success	cmgui:	ndiff test: no significant differences with generic answer.
  Success	cmgui-debug:	ndiff test: no significant differences with generic answer.
  Success	cmgui-debug-memorycheck:	ndiff test: no significant differences with generic answer.
  Success	cmgui-motif:	ndiff test: no significant differences with generic answer.
  Success	cmgui-motif-debug:	ndiff test: no significant differences with generic answer.
  Success	cmgui-motif-debug-memorycheck:	ndiff test: no significant differences with generic answer.
  Success	cmgui-wx:	ndiff test: no significant differences with generic answer.
  Success	cmgui-wx-debug:	ndiff test: no significant differences with generic answer.
  Success	cmgui-wx-debug-memorycheck:	ndiff test: no significant differences with generic answer.
  Success	cmgui-wx-debug-valgrind:	ndiff test: no significant differences with generic answer.
  Success	cmgui-wx-gcc-cad-debug:	ndiff test: no significant differences with generic answer.

  
  

Graphical output from this problem is given here.

Html last generated: Sun Mar 6 05:51:40 2016

Input last modified: Mon Jul 10 10:03:38 2006