Example cellml/noble_1962: Noble 1962

This example solves the Noble 1962 Purkinje fibre and pace-maker model, defined by a CellML version of the model.

NOTE: This example requires a CellML 1.0 enabled version of CMISS to run.

The comfile run by this example is as follows:

if (! defined $example) {
    $example = "./";
}
$chopped = chop $example;
if ($chopped ne "/") {
    $example .= $chopped;
}

fem define parameters;r;$example/cellml;
fem define node;d;
fem define bas;d;
fem define elem;d;
fem define grid;d;
fem update grid geometry;
fem update grid metric;
fem define equation;r;$example/cellml;
fem define cell;r;$example/n_model_1962;
fem define material;d cell;
fem define material;d;
fem update grid material;
fem define initial;d;
fem define solve;r;$example/lsoda;
fem solve to 0;
fem open history;n_model_1962 write variables yqs niqslist 1..9 binary;
$Tend = 5000;
$dt = 5.0;
for ($time=0;$time<$Tend;$time+=$dt) {
    fem solve restart to $time;
    fem write history time $time variables yqs binary;
}
fem close history binary;
fem evaluate electrode;n_model_1962 history n_model_1962 from grid yqs iy 1..9 binary;
fem define export;r;$example/n_model_1962;
fem export signal;n_model_1962 electrodes signal n_model_1962 names cell;

# For testing we compare the generated CMISS signal files
if ($TESTING) {
    fem compare signal;n_model_1962 basis both masterfile $example/n_model_1962 comparefile n_model_1962 binary;
}

Files used by this example are:

Name                 Modified     Size

noble_1962.com       13-Oct-2003  1.1k
cellml.ipequa        13-Oct-2003  1.5k
cellml.ippara        13-Oct-2003  5.9k
lsoda.ipsolv         13-Oct-2003  1.2k
n_model_1962.binsig  13-Oct-2003   69k
n_model_1962.cml     13-Oct-2003   36k
n_model_1962.ipcell  14-Oct-2003  3.7k
n_model_1962.ipexpo  13-Oct-2003  657 

Download the entire example:

Name                               Modified     Size

examples_cellml_noble_1962.tar.gz  19-Aug-2006   39k

Testing status by version:

Testing status by file:

• cmiss_test.log
  

  i686-linux
  Success	cm:	cmiss_test.log.retain.
  Success	cm-debug:	cmiss_test.log.retain.
  mips-irix
  Success	cm:	cmiss_test.log.retain.
  Success	cm-debug:	cmiss_test.log.retain.
  Success	cm-debug-clear-malloc:	cmiss_test.log.retain.
  Success	cm-debug-clear-malloc7:	cmiss_test.log.retain.
  Success	cm64:	cmiss_test.log.retain.
  Success	cm64-debug:	cmiss_test.log.retain.
  Success	cm64-debug-clear-malloc:	cmiss_test.log.retain.
  rs6000-aix
  Success	cm:	cmiss_test.log.retain.
  Success	cm-debug:	cmiss_test.log.retain.
  Success	cm64:	cmiss_test.log.retain.
  Success	cm64-debug:	cmiss_test.log.retain.
  x86_64-linux
  Success	cm:	cmiss_test.log.retain.
  Success	cm-debug:	cmiss_test.log.retain.

  
  
• n_model_1962.opcomp
  

  i686-linux
  Success	cm:	ndiff test: no significant differences with generic answer.
  Success	cm-debug:	ndiff test: no significant differences with generic answer.
  mips-irix
  Success	cm:	ndiff test: no significant differences with generic answer.
  Success	cm-debug:	ndiff test: no significant differences with generic answer.
  Success	cm-debug-clear-malloc:	ndiff test: no significant differences with generic answer.
  Success	cm-debug-clear-malloc7:	ndiff test: no significant differences with generic answer.
  Success	cm64:	ndiff test: no significant differences with generic answer.
  Success	cm64-debug:	ndiff test: no significant differences with generic answer.
  Success	cm64-debug-clear-malloc:	ndiff test: no significant differences with generic answer.
  rs6000-aix
  Success	cm:	ndiff test: no significant differences with generic answer.
  Success	cm-debug:	ndiff test: no significant differences with generic answer.
  Success	cm64:	ndiff test: no significant differences with generic answer.
  Success	cm64-debug:	ndiff test: no significant differences with generic answer.
  x86_64-linux
  Success	cm:	ndiff test: no significant differences with generic answer.
  Success	cm-debug:	ndiff test: no significant differences with generic answer.

  
  

Html last generated: Sun Mar 6 05:51:21 2016

Input last modified: Tue Oct 14 09:40:37 2003