Drouhard - Roberge 1987

Example cellml/drouhard_roberge_1987: Drouhard - Roberge 1987

This example solves the Drouhard & Roberge (1987) modified Beeler & Reuter model, defined by a CellML version of the model.

NOTE: This example requires a CellML 1.0 enabled version of CMISS to run.

The comfile run by this example is as follows:

# If the example path is not set, default to current directory
if (! defined $example) {
    $example = "./";
}
# Drop off the trailing / in the example path
$chopped = chop $example;
if ($chopped ne "/") {
    $example .= $chopped;
}
fem define parameters;r;$example/cellml;
fem define node;d;
fem define bas;d;
fem define elem;d;
fem define grid;d;
fem update grid geometry;
fem update grid metric;
fem define equation;r;$example/cellml;
fem define cell;r;$example/drouhard_roberge_model_1987;
fem define material;d cell;
fem define material;d;
fem update grid material;
fem define initial;d;
fem define solve;r;$example/lsoda;
fem solve to 0;
fem open history;drouhard_roberge_model_1987 write variables yqs niqslist 1..13 binary;
$Tend = 1500;
$dt = 1.0;
for ($time=0;$time<$Tend;$time+=$dt) {
    fem solve restart to $time;
    fem write history time $time variables yqs binary;
}
fem close history binary;
fem evaluate electrode;drouhard_roberge_model_1987 history drouhard_roberge_model_1987 from grid yqs iy 1..13 binary;
fem define export;r;$example/drouhard_roberge_model_1987;
fem export signal;drouhard_roberge_model_1987 electrodes signal drouhard_roberge_model_1987 names cell;
# For testing we compare the generated CMISS signal files
if ($TESTING) {
    fem compare signal;drouhard_roberge_model_1987 basis both masterfile $example/drouhard_roberge_model_1987 comparefile drouhard_roberge_model_1987 binary;
}

Files used by this example are:

Name                                Modified     Size

drouhard_roberge_1987.com           28-Jul-2003  1.4k
cellml.ipequa                       28-Jul-2003  1.5k
cellml.ippara                       28-Jul-2003  5.9k
drouhard_roberge_model_1987.binsig  28-Jul-2003  127k
drouhard_roberge_model_1987.cml     04-Oct-2003   47k
drouhard_roberge_model_1987.ipcell  28-Jul-2003  3.8k
drouhard_roberge_model_1987.ipexpo  28-Jul-2003  658 
lsoda.ipsolv                        28-Jul-2003  1.2k

Download the entire example:

Name                                          Modified     Size

examples_cellml_drouhard_roberge_1987.tar.gz  19-Aug-2006   77k

Testing status by version:

	Status	Tested	Real time (s)
i686-linux
cm	Success	Sun Mar 6 00:04:08 2016	4
cm-debug	Success	Sat Mar 5 00:16:51 2016	7
mips-irix
cm	Success	Sun Aug 19 02:45:45 2007	70
cm-debug	Success	Wed Aug 15 02:25:39 2007	129
cm-debug-clear-malloc	Success	Sat Aug 18 02:45:30 2007	133
cm-debug-clear-malloc7	Success	Mon Aug 20 02:44:22 2007	139
cm64	Success	Sun Aug 19 02:46:46 2007	73
cm64-debug	Success	Tue Aug 21 02:28:01 2007	132
cm64-debug-clear-malloc	Success	Thu Apr 1 11:44:37 2004	64
rs6000-aix
cm	Success	Wed Mar 4 01:16:11 2009	10
cm-debug	Success	Mon Mar 2 01:14:02 2009	23
cm64	Success	Wed Mar 4 01:13:48 2009	11
cm64-debug	Success	Tue Mar 3 01:19:42 2009	23
x86_64-linux
cm	Success	Sun Mar 6 00:01:14 2016	2
cm-debug	Success	Sat Mar 5 00:01:54 2016	3

Testing status by file:

cmiss_test.log

i686-linux
Success	cm:	cmiss_test.log.retain.
Success	cm-debug:	cmiss_test.log.retain.
mips-irix
Success	cm:	cmiss_test.log.retain.
Success	cm-debug:	cmiss_test.log.retain.
Success	cm-debug-clear-malloc:	cmiss_test.log.retain.
Success	cm-debug-clear-malloc7:	cmiss_test.log.retain.
Success	cm64:	cmiss_test.log.retain.
Success	cm64-debug:	cmiss_test.log.retain.
Success	cm64-debug-clear-malloc:	cmiss_test.log.retain.
rs6000-aix
Success	cm:	cmiss_test.log.retain.
Success	cm-debug:	cmiss_test.log.retain.
Success	cm64:	cmiss_test.log.retain.
Success	cm64-debug:	cmiss_test.log.retain.
x86_64-linux
Success	cm:	cmiss_test.log.retain.
Success	cm-debug:	cmiss_test.log.retain.

drouhard_roberge_model_1987.opcomp

i686-linux
Success	cm:	ndiff test: no significant differences with generic answer.
Success	cm-debug:	ndiff test: no significant differences with generic answer.
mips-irix
Success	cm:	ndiff test: no significant differences with generic answer.
Success	cm-debug:	ndiff test: no significant differences with generic answer.
Success	cm-debug-clear-malloc:	ndiff test: no significant differences with generic answer.
Success	cm-debug-clear-malloc7:	ndiff test: no significant differences with generic answer.
Success	cm64:	ndiff test: no significant differences with generic answer.
Success	cm64-debug:	ndiff test: no significant differences with generic answer.
Success	cm64-debug-clear-malloc:	ndiff test: no significant differences with generic answer.
rs6000-aix
Success	cm:	ndiff test: no significant differences with generic answer.
Success	cm-debug:	ndiff test: no significant differences with generic answer.
Success	cm64:	ndiff test: no significant differences with generic answer.
Success	cm64-debug:	ndiff test: no significant differences with generic answer.
x86_64-linux
Success	cm:	ndiff test: no significant differences with generic answer.
Success	cm-debug:	ndiff test: no significant differences with generic answer.

Html last generated: Sun Mar 6 05:51:20 2016

Input last modified: Sat Oct 4 23:40:04 2003

CMISS Help / Examples / cellml / drouhard_roberge_1987