Beeler - Reuter 1977

Example cellml/beeler_reuter_1977: Beeler - Reuter 1977

This example solves the Beeler & Reuter 1977 model, defined by a CellML version of the model.

NOTE: This example requires a CellML 1.0 enabled version of CMISS to run.

The comfile run by this example is as follows:

# If the example path is not set, default to current directory
if (! defined $example) {
    $example = "./";
}
# Drop off the trailing / in the example path
$chopped = chop $example;
if ($chopped ne "/") {
    $example .= $chopped;
}
fem define parameters;r;$example/cellml;
fem define node;d;
fem define bas;d;
fem define elem;d;
fem define grid;d;
fem update grid geometry;
fem update grid metric;
fem define equation;r;$example/cellml;
fem define cell;r;$example/beeler_reuter_model_1977;
fem define material;d cell;
fem define material;d;
fem update grid material;
fem define initial;d;
fem define solve;r;$example/lsoda;
fem solve to 0;
fem open history;beeler_reuter_model_1977 write variables yqs niqslist 1..15 binary;
$Tend = 1500;
$dt = 1.0;
for ($time=0;$time<$Tend;$time+=$dt) {
    fem solve restart to $time;
    fem write history time $time variables yqs binary;
}
fem close history binary;
fem evaluate electrode;beeler_reuter_model_1977 history beeler_reuter_model_1977 from grid yqs iy 1..15 binary;
fem define export;r;$example/beeler_reuter_model_1977;
fem export signal;beeler_reuter_model_1977 electrodes signal beeler_reuter_model_1977 names cell;
# For testing we compare the generated CMISS signal files
if ($TESTING) {
    fem compare signal;beeler_reuter_model_1977 basis both masterfile $example/beeler_reuter_model_1977 comparefile beeler_reuter_model_1977 binary;
}

Files used by this example are:

Name                             Modified     Size

beeler_reuter_1977.com           26-Jul-2003  1.4k
beeler_reuter_model_1977.binsig  26-Jul-2003  139k
beeler_reuter_model_1977.cml     04-Oct-2003   68k
beeler_reuter_model_1977.ipcell  26-Jul-2003  4.2k
beeler_reuter_model_1977.ipexpo  26-Jul-2003  658 
cellml.ipequa                    26-Jul-2003  1.5k
cellml.ippara                    26-Jul-2003  5.9k
lsoda.ipsolv                     26-Jul-2003  1.2k

Download the entire example:

Name                                       Modified     Size

examples_cellml_beeler_reuter_1977.tar.gz  19-Aug-2006   95k

Testing status by version:

	Status	Tested	Real time (s)
i686-linux
cm	Success	Sun Mar 6 00:04:48 2016	5
cm-debug	Success	Sat Mar 5 00:16:15 2016	8
mips-irix
cm	Success	Sun Aug 19 02:45:32 2007	72
cm-debug	Success	Wed Aug 15 02:28:26 2007	132
cm-debug-clear-malloc	Success	Sat Aug 18 02:45:24 2007	138
cm-debug-clear-malloc7	Success	Mon Aug 20 02:42:00 2007	136
cm64	Success	Sun Aug 19 02:50:42 2007	73
cm64-debug	Success	Tue Aug 21 02:30:45 2007	134
cm64-debug-clear-malloc	Success	Thu Apr 1 11:44:07 2004	67
rs6000-aix
cm	Success	Wed Mar 4 01:17:09 2009	14
cm-debug	Success	Mon Mar 2 01:12:31 2009	25
cm64	Success	Wed Mar 4 01:17:11 2009	13
cm64-debug	Success	Tue Mar 3 01:20:18 2009	25
x86_64-linux
cm	Success	Sun Mar 6 00:01:14 2016	2
cm-debug	Success	Sat Mar 5 00:01:58 2016	4

Testing status by file:

cmiss_test.log

i686-linux
Success	cm:	cmiss_test.log.retain.
Success	cm-debug:	cmiss_test.log.retain.
mips-irix
Success	cm:	cmiss_test.log.retain.
Success	cm-debug:	cmiss_test.log.retain.
Success	cm-debug-clear-malloc:	cmiss_test.log.retain.
Success	cm-debug-clear-malloc7:	cmiss_test.log.retain.
Success	cm64:	cmiss_test.log.retain.
Success	cm64-debug:	cmiss_test.log.retain.
Success	cm64-debug-clear-malloc:	cmiss_test.log.retain.
rs6000-aix
Success	cm:	cmiss_test.log.retain.
Success	cm-debug:	cmiss_test.log.retain.
Success	cm64:	cmiss_test.log.retain.
Success	cm64-debug:	cmiss_test.log.retain.
x86_64-linux
Success	cm:	cmiss_test.log.retain.
Success	cm-debug:	cmiss_test.log.retain.

beeler_reuter_model_1977.opcomp

i686-linux
Success	cm:	ndiff test: no significant differences with generic answer.
Success	cm-debug:	ndiff test: no significant differences with generic answer.
mips-irix
Success	cm:	ndiff test: no significant differences with generic answer.
Success	cm-debug:	ndiff test: no significant differences with generic answer.
Success	cm-debug-clear-malloc:	ndiff test: no significant differences with generic answer.
Success	cm-debug-clear-malloc7:	ndiff test: no significant differences with generic answer.
Success	cm64:	ndiff test: no significant differences with generic answer.
Success	cm64-debug:	ndiff test: no significant differences with generic answer.
Success	cm64-debug-clear-malloc:	ndiff test: no significant differences with generic answer.
rs6000-aix
Success	cm:	ndiff test: no significant differences with generic answer.
Success	cm-debug:	ndiff test: no significant differences with generic answer.
Success	cm64:	ndiff test: no significant differences with generic answer.
Success	cm64-debug:	ndiff test: no significant differences with generic answer.
x86_64-linux
Success	cm:	ndiff test: no significant differences with generic answer.
Success	cm-debug:	ndiff test: no significant differences with generic answer.

Html last generated: Sun Mar 6 05:51:20 2016

Input last modified: Sat Oct 4 17:48:12 2003

CMISS Help / Examples / cellml / beeler_reuter_1977