This example solves the Luo & Rudy 1991 model (more commonly known as the LR I model), defined by a CellML version of the model.
NOTE: This example requires a CellML 1.0 enabled version of CMISS to run.
# If the example path is not set, default to current directory if (! defined $example) { $example = "./"; } # Drop off the trailing / in the example path $chopped = chop $example; if ($chopped ne "/") { $example .= $chopped; } fem define parameters;r;$example/cellml; fem define node;d; fem define bas;d; fem define elem;d; fem define grid;d; fem update grid geometry; fem update grid metric; fem define equation;r;$example/cellml; fem define cell;r;$example/luo_rudy_I_model_1991; fem define material;d cell; fem define material;d; fem update grid material; fem define initial;d; fem define solve;r;$example/rk; fem solve to 0; fem open history;luo_rudy_I_model_1991 write variables yqs niqslist 1..17 binary; $Tend = 1500; $dt = 1.0; for ($time=0;$time<$Tend;$time+=$dt) { fem solve restart to $time; fem write history time $time variables yqs binary; } fem close history binary; fem evaluate electrode;luo_rudy_I_model_1991 history luo_rudy_I_model_1991 from grid yqs iy 1..17 binary; fem define export;r;$example/luo_rudy_I_model_1991; fem export signal;luo_rudy_I_model_1991 electrodes signal luo_rudy_I_model_1991 names cell; # For testing we compare the generated CMISS signal files if ($TESTING) { fem compare signal;luo_rudy_I_model_1991 basis both masterfile $example/luo_rudy_I_model_1991 comparefile luo_rudy_I_model_1991 binary; }
Name Modified Size
LR1.com 31-Jul-2003 1.3k cellml.ipequa 31-Jul-2003 1.5k cellml.ippara 31-Jul-2003 5.9k luo_rudy_I_model_1991.binsig 31-Jul-2003 151k luo_rudy_I_model_1991.cml 05-Oct-2003 97k luo_rudy_I_model_1991.ipcell 31-Jul-2003 7.3k luo_rudy_I_model_1991.ipexpo 31-Jul-2003 658 rk.ipsolv 31-Jul-2003 907
Name Modified Size
examples_cellml_LR1.tar.gz 19-Aug-2006 99k
Status | Tested | Real time (s) | |
i686-linux | |||
cm | Success | Sun Mar 6 00:04:06 2016 | 4 |
cm-debug | Success | Sat Mar 5 00:16:11 2016 | 8 |
mips-irix | |||
cm | Success | Sun Aug 19 02:42:45 2007 | 68 |
cm-debug | Success | Wed Aug 15 02:11:19 2007 | 111 |
cm-debug-clear-malloc | Success | Sat Aug 18 02:28:02 2007 | 125 |
cm-debug-clear-malloc7 | Success | Mon Aug 20 02:27:32 2007 | 115 |
cm64 | Success | Sun Aug 19 02:42:55 2007 | 69 |
cm64-debug | Success | Tue Aug 21 02:13:36 2007 | 115 |
cm64-debug-clear-malloc | Success | Thu Apr 1 11:39:14 2004 | 71 |
rs6000-aix | |||
cm | Success | Wed Mar 4 01:14:39 2009 | 12 |
cm-debug | Success | Mon Mar 2 01:11:40 2009 | 23 |
cm64 | Success | Wed Mar 4 01:16:42 2009 | 13 |
cm64-debug | Success | Tue Mar 3 01:18:45 2009 | 21 |
x86_64-linux | |||
cm | Success | Sun Mar 6 00:01:11 2016 | 2 |
cm-debug | Success | Sat Mar 5 00:01:58 2016 | 4 |
i686-linux | |||
Success | cm: | cmiss_test.log.retain. | |
Success | cm-debug: | cmiss_test.log.retain. | |
mips-irix | |||
Success | cm: | cmiss_test.log.retain. | |
Success | cm-debug: | cmiss_test.log.retain. | |
Success | cm-debug-clear-malloc: | cmiss_test.log.retain. | |
Success | cm-debug-clear-malloc7: | cmiss_test.log.retain. | |
Success | cm64: | cmiss_test.log.retain. | |
Success | cm64-debug: | cmiss_test.log.retain. | |
Success | cm64-debug-clear-malloc: | cmiss_test.log.retain. | |
rs6000-aix | |||
Success | cm: | cmiss_test.log.retain. | |
Success | cm-debug: | cmiss_test.log.retain. | |
Success | cm64: | cmiss_test.log.retain. | |
Success | cm64-debug: | cmiss_test.log.retain. | |
x86_64-linux | |||
Success | cm: | cmiss_test.log.retain. | |
Success | cm-debug: | cmiss_test.log.retain. |
i686-linux | |||
Success | cm: | ndiff test: no significant differences with generic answer. | |
Success | cm-debug: | ndiff test: no significant differences with generic answer. | |
mips-irix | |||
Success | cm: | ndiff test: no significant differences with generic answer. | |
Success | cm-debug: | ndiff test: no significant differences with generic answer. | |
Success | cm-debug-clear-malloc: | ndiff test: no significant differences with generic answer. | |
Success | cm-debug-clear-malloc7: | ndiff test: no significant differences with generic answer. | |
Success | cm64: | ndiff test: no significant differences with generic answer. | |
Success | cm64-debug: | ndiff test: no significant differences with generic answer. | |
Success | cm64-debug-clear-malloc: | ndiff test: no significant differences with generic answer. | |
rs6000-aix | |||
Success | cm: | ndiff test: no significant differences with generic answer. | |
Success | cm-debug: | ndiff test: no significant differences with generic answer. | |
Success | cm64: | ndiff test: no significant differences with generic answer. | |
Success | cm64-debug: | ndiff test: no significant differences with generic answer. | |
x86_64-linux | |||
Success | cm: | ndiff test: no significant differences with generic answer. | |
Success | cm-debug: | ndiff test: no significant differences with generic answer. |
Html last generated: Sun Mar 6 05:51:19 2016
Input last modified: Sun Oct 5 16:50:14 2003