Example cellml/DFN_1985: DiFrancesco - Noble 1985

This example solves the DiFrancesco & Noble 1985 Purkinje fibre model, defined by a CellML version of the model.

NOTE: This example requires a CellML 1.0 enabled version of CMISS to run.

The comfile run by this example is as follows:

# If the example path is not set, default to current directory
if (! defined $example) {
    $example = "./";
}
# Drop off the trailing / in the example path
$chopped = chop $example;
if ($chopped ne "/") {
    $example .= $chopped;
}

fem define parameters;r;$example/cellml;
fem define node;d;
fem define bas;d;
fem define elem;d;
fem define grid;d;
fem update grid geometry;
fem update grid metric;
fem define equation;r;$example/cellml;
fem define cell;r;$example/difrancesco_noble_model_1985;
fem define material;d cell;
fem define material;d;
fem update grid material;
fem define initial;d;
fem define solve;r;$example/lsoda;
fem solve to 0;
fem open history;difrancesco_noble_model_1985 write variables yqs niqslist 1..35 binary;
$Tend = 5500;
$dt = 10.0;
for ($time=0;$time<$Tend;$time+=$dt) {
    fem solve restart to $time;
    fem write history time $time variables yqs binary;
}
fem close history binary;
fem evaluate electrode;difrancesco_noble_model_1985 history difrancesco_noble_model_1985 from grid yqs iy 1..35 binary;
fem define export;r;$example/difrancesco_noble_model_1985;
fem export signal;difrancesco_noble_model_1985 electrodes signal difrancesco_noble_model_1985 names cell;

# For testing we compare the generated CMISS signal files
if ($TESTING) {
    fem compare signal;difrancesco_noble_model_1985 basis both masterfile $example/difrancesco_noble_model_1985 comparefile difrancesco_noble_model_1985 binary;
}

Files used by this example are:

Name                                 Modified     Size

DFN_1985.com                         30-Oct-2003  1.4k
cellml.ipequa                        30-Oct-2003  1.5k
cellml.ippara                        30-Oct-2003  5.9k
difrancesco_noble_model_1985.binsig  30-Oct-2003   94k
difrancesco_noble_model_1985.cml     02-Nov-2003  158k
difrancesco_noble_model_1985.ipcell  30-Oct-2003   13k
difrancesco_noble_model_1985.ipexpo  30-Oct-2003  658 
lsoda.ipsolv                         30-Oct-2003  1.2k

Download the entire example:

Name                             Modified     Size

examples_cellml_DFN_1985.tar.gz  19-Aug-2006   93k

Testing status by version:

Testing status by file:

• cmiss_test.log
  

  i686-linux
  Success	cm:	cmiss_test.log.retain.
  Success	cm-debug:	cmiss_test.log.retain.
  mips-irix
  Success	cm:	cmiss_test.log.retain.
  Success	cm-debug:	cmiss_test.log.retain.
  Success	cm-debug-clear-malloc:	cmiss_test.log.retain.
  Success	cm-debug-clear-malloc7:	cmiss_test.log.retain.
  Success	cm64:	cmiss_test.log.retain.
  Success	cm64-debug:	cmiss_test.log.retain.
  Success	cm64-debug-clear-malloc:	cmiss_test.log.retain.
  rs6000-aix
  Success	cm:	cmiss_test.log.retain.
  Success	cm-debug:	cmiss_test.log.retain.
  Success	cm64:	cmiss_test.log.retain.
  Success	cm64-debug:	cmiss_test.log.retain.
  x86_64-linux
  Success	cm:	cmiss_test.log.retain.
  Success	cm-debug:	cmiss_test.log.retain.

  
  
• difrancesco_noble_model_1985.opcomp
  

  i686-linux
  Success	cm:	ndiff test: no significant differences with generic answer.
  Success	cm-debug:	ndiff test: no significant differences with generic answer.
  mips-irix
  Success	cm:	ndiff test: no significant differences with generic answer.
  Success	cm-debug:	ndiff test: no significant differences with generic answer.
  Success	cm-debug-clear-malloc:	ndiff test: no significant differences with generic answer.
  Success	cm-debug-clear-malloc7:	ndiff test: no significant differences with generic answer.
  Success	cm64:	ndiff test: no significant differences with generic answer.
  Success	cm64-debug:	ndiff test: no significant differences with generic answer.
  Success	cm64-debug-clear-malloc:	ndiff test: no significant differences with generic answer.
  rs6000-aix
  Success	cm:	ndiff test: no significant differences with generic answer.
  Success	cm-debug:	ndiff test: no significant differences with generic answer.
  Success	cm64:	ndiff test: no significant differences with generic answer.
  Success	cm64-debug:	ndiff test: no significant differences with generic answer.
  x86_64-linux
  Success	cm:	ndiff test: no significant differences with generic answer.
  Success	cm-debug:	ndiff test: no significant differences with generic answer.

  
  

Html last generated: Sun Mar 6 05:51:18 2016

Input last modified: Sun Nov 2 16:39:31 2003