Example cellml/Adrian_Chandler_Hodgkin_1970: Adrian, Chandler and Hodgkin Skeletal Muscle Cell

This example solves the Adrian-Chandler-Hodgkin cell model for a frog sartorius myocyte (skeletal muscle).

NOTE: This example requires a CellML 1.0 enabled version of CMISS to run.


The comfile run by this example is as follows:

# Set the example path if it is not already set
if( !defined $example ) {
  $example = ".";
}

fem define para;r;$example/ach;
fem define node;d;
fem define base;d;
fem define elem;d;
fem define grid;d;
fem update grid geometry;
fem update grid metric;

fem define equa;r;$example/ach;
fem define cell;r;$example/ach;
fem define mate;r;$example/ach cell;
fem define mate;r;$example/ach;
fem update grid material;
fem define init;r;$example/ach;
fem define solv;r;$example/ach;

fem solve to 0;
fem open history;ach write variables yqs niqslist 1..6 binary;

foreach $step ( 0..1000 ) { 
  $time = $step/10
  fem solve restart to $time;
  fem write history time $time variables yqs binary;
}

fem close history binary;
fem evaluate elec;ach hist ach from grid yqs iy 1..6 binary;
fem define export;r;$example/ach;
fem export signal;ach elec signal ach;

Additional testing commands:

fem compare signal;ach basis both masterfile $example/ach comparefile ach binary;

Files used by this example are:

Name                              Modified     Size

Adrian_Chandler_Hodgkin_1970.com 30-Oct-2003 852 ach.binhis 31-Oct-2003 97k ach.binsig 30-Oct-2003 57k ach.cml 30-Oct-2003 33k ach.ipcell 31-Oct-2003 7.9k ach.ipequa 30-Oct-2003 1.5k ach.ipexpo 30-Oct-2003 658 ach.ipinit 30-Oct-2003 214 ach.ipmatc 30-Oct-2003 356 ach.ipmate 30-Oct-2003 3.2k ach.ippara 30-Oct-2003 5.9k ach.ipsolv 31-Oct-2003 947 ach.signal 30-Oct-2003 27k test_output.com 30-Oct-2003 82

Download the entire example:

Name                                                 Modified     Size

examples_cellml_Adrian_Chandler_Hodgkin_1970.tar.gz 19-Aug-2006 97k

Testing status by version:

StatusTestedReal time (s)
i686-linux
cmSuccessSun Mar 6 00:03:25 20162
cm-debugSuccessSat Mar 5 00:10:52 20163
mips-irix
cmSuccessSun Aug 19 02:10:42 200739
cm-debugSuccessWed Aug 15 01:53:31 200767
cm-debug-clear-mallocSuccessSat Aug 18 02:07:05 200774
cm-debug-clear-malloc7SuccessMon Aug 20 02:02:19 200788
cm64SuccessSun Aug 19 02:12:16 200740
cm64-debugSuccessTue Aug 21 01:54:50 200766
cm64-debug-clear-mallocSuccessThu Apr 1 11:33:51 200429
rs6000-aix
cmSuccessWed Mar 4 01:09:02 20091
cm-debugSuccessMon Mar 2 01:10:04 20098
cm64SuccessWed Mar 4 01:09:19 20092
cm64-debugSuccessTue Mar 3 01:15:06 20098
x86_64-linux
cmSuccessSun Mar 6 00:01:07 20161
cm-debugSuccessSat Mar 5 00:01:45 20161

Testing status by file:


Html last generated: Sun Mar 6 05:51:18 2016

Input last modified: Mon Nov 3 07:24:15 2003


CMISS Help / Examples / cellml / Adrian_Chandler_Hodgkin_1970