2d skewed isotropic bidomain with cubic activation

Example b2127: 2d skewed isotropic bidomain with cubic activation

This example solves the bidomain equations with the cubic ionic current model (implicit diffusion) on a skewed 2d mesh and isotropic implicit and explicit conductivities.

The comfile run by this example is as follows:

fem define para;r;test;example

fem define node;r;test;example
fem define base;r;test;example
fem define elem;r;test;example
fem define fibr;r;test;example
fem define elem;r;test;example fibre
fem define grid;r;test;example
fem update grid geom
fem update grid metric
fem group grid external as boundary
fem define equa;r;test;example cl 1,2
fem define mate;r;test;example cl 1,2
fem define cell;r;test;example cl 1,2
fem update grid material cl 1,2
fem define init;r;test;example cl 1,2
fem define solv;r;test;example cl 1
fem define solv;r;test;example cl 2
fem solve to 0 cl 1,2
fem define win
 
fem solve restart to 5 cl 1,2
fem draw field grid 1 zmin=-120 zmax=20 noscale

Additional testing commands:

fem list grid grid 1500..1600 yq index v

Files used by this example are:

Name                  Modified     Size

example_b2127.com     20-Nov-2001  677 
test.ipbase           10-Apr-2000  1.1k
test.ipcell           10-Apr-2000  1.7k
test.ipelem           10-Apr-2000  1.1k
test.ipelfb           10-Apr-2000  624 
test.ipequa           26-May-2003  1.4k
test.ipfibr           30-Jan-2001  1.1k
test.ipgrid           06-Mar-2003  539 
test.ipinit           10-Apr-2000  850 
test.ipmate           10-Apr-2000  1.7k
test.ipmate_cell_old  10-Apr-2000  3.5k
test.ipmesh           10-Apr-2000  787 
test.ipnode           10-Apr-2000  1.7k
test.ippara           12-Nov-2002  5.9k
test.ipsolv           13-Apr-2007  1.8k
test.ipsolv.old       10-Apr-2000  1.5k
test_output.com       23-Apr-2001   41

Download the entire example:

Name                                 Modified     Size

examples_b_b2_b21_b212_b2127.tar.gz  14-Apr-2007  8.1k

Testing status by version:

	Status	Tested	Real time (s)
i686-linux
cm	Success	Sun Mar 6 00:04:20 2016	4
cm-debug	Success	Sat Mar 5 00:23:12 2016	14
mips-irix
cm	Success	Sun Aug 19 02:48:01 2007	73
cm-debug	Success	Wed Aug 15 03:48:26 2007	344
cm-debug-clear-malloc	Success	Sat Aug 18 04:15:26 2007	355
cm-debug-clear-malloc7	Success	Mon Aug 20 04:26:10 2007	352
cm64	Success	Sun Aug 19 02:41:35 2007	70
cm64-debug	Success	Tue Aug 21 03:19:18 2007	404
cm64-debug-clear-malloc	Success	Thu Apr 1 11:19:58 2004	170
rs6000-aix
cm	Success	Wed Mar 4 01:12:03 2009	5
cm-debug	Success	Mon Mar 2 01:26:29 2009	62
cm64	Success	Wed Mar 4 01:11:57 2009	6
cm64-debug	Success	Tue Mar 3 01:27:56 2009	66
x86_64-linux
cm	Success	Sun Mar 6 00:01:13 2016	2
cm-debug	Success	Sat Mar 5 00:02:12 2016	8

Testing status by file:

cmiss_test.log

i686-linux
Success	cm:	cmiss_test.log.retain.
Success	cm-debug:	cmiss_test.log.retain.
mips-irix
Success	cm:	cmiss_test.log.retain.
Success	cm-debug:	cmiss_test.log.retain.
Success	cm-debug-clear-malloc:	cmiss_test.log.retain.
Success	cm-debug-clear-malloc7:	cmiss_test.log.retain.
Success	cm64:	cmiss_test.log.retain.
Success	cm64-debug:	cmiss_test.log.retain.
Success	cm64-debug-clear-malloc:	cmiss_test.log.retain.
rs6000-aix
Success	cm:	cmiss_test.log.retain.
Success	cm-debug:	cmiss_test.log.retain.
Success	cm64:	cmiss_test.log.retain.
Success	cm64-debug:	cmiss_test.log.retain.
x86_64-linux
Success	cm:	cmiss_test.log.retain.
Success	cm-debug:	cmiss_test.log.retain.

cmiss_test.out

i686-linux
Success	cm:	ndiff test: no significant differences with generic answer.
Success	cm-debug:	ndiff test: no significant differences with generic answer.
mips-irix
Success	cm:	ndiff test: no significant differences with generic answer.
Success	cm-debug:	ndiff test: no significant differences with generic answer.
Success	cm-debug-clear-malloc:	ndiff test: no significant differences with generic answer.
Success	cm-debug-clear-malloc7:	ndiff test: no significant differences with generic answer.
Success	cm64:	ndiff test: no significant differences with generic answer.
Success	cm64-debug:	ndiff test: no significant differences with generic answer.
Success	cm64-debug-clear-malloc:	ndiff test: no significant differences with generic answer.
rs6000-aix
Success	cm:	ndiff test: no significant differences with generic answer.
Success	cm-debug:	ndiff test: no significant differences with generic answer.
Success	cm64:	ndiff test: no significant differences with generic answer.
Success	cm64-debug:	ndiff test: no significant differences with generic answer.
x86_64-linux
Success	cm:	ndiff test: no significant differences with generic answer.
Success	cm-debug:	ndiff test: no significant differences with generic answer.

Html last generated: Sun Mar 6 05:51:10 2016

Input last modified: Fri Apr 13 10:38:36 2007

CMISS Help / Examples / b / b2 / b21 / b212 / b2127