Example b2127: 2d skewed isotropic bidomain with cubic activation

This example solves the bidomain equations with the cubic ionic current model (implicit diffusion) on a skewed 2d mesh and isotropic implicit and explicit conductivities.


The comfile run by this example is as follows:

fem define para;r;test;example

fem define node;r;test;example
fem define base;r;test;example
fem define elem;r;test;example
fem define fibr;r;test;example
fem define elem;r;test;example fibre
fem define grid;r;test;example
fem update grid geom
fem update grid metric
fem group grid external as boundary
fem define equa;r;test;example cl 1,2
fem define mate;r;test;example cl 1,2
fem define cell;r;test;example cl 1,2
fem update grid material cl 1,2
fem define init;r;test;example cl 1,2
fem define solv;r;test;example cl 1
fem define solv;r;test;example cl 2
fem solve to 0 cl 1,2
fem define win
 
fem solve restart to 5 cl 1,2
fem draw field grid 1 zmin=-120 zmax=20 noscale

Additional testing commands:

fem list grid grid 1500..1600 yq index v

Files used by this example are:

Name                  Modified     Size

example_b2127.com 20-Nov-2001 677 test.ipbase 10-Apr-2000 1.1k test.ipcell 10-Apr-2000 1.7k test.ipelem 10-Apr-2000 1.1k test.ipelfb 10-Apr-2000 624 test.ipequa 26-May-2003 1.4k test.ipfibr 30-Jan-2001 1.1k test.ipgrid 06-Mar-2003 539 test.ipinit 10-Apr-2000 850 test.ipmate 10-Apr-2000 1.7k test.ipmate_cell_old 10-Apr-2000 3.5k test.ipmesh 10-Apr-2000 787 test.ipnode 10-Apr-2000 1.7k test.ippara 12-Nov-2002 5.9k test.ipsolv 13-Apr-2007 1.8k test.ipsolv.old 10-Apr-2000 1.5k test_output.com 23-Apr-2001 41

Download the entire example:

Name                                 Modified     Size

examples_b_b2_b21_b212_b2127.tar.gz 14-Apr-2007 8.1k

Testing status by version:

StatusTestedReal time (s)
i686-linux
cmSuccessSun Mar 6 00:04:20 20164
cm-debugSuccessSat Mar 5 00:23:12 201614
mips-irix
cmSuccessSun Aug 19 02:48:01 200773
cm-debugSuccessWed Aug 15 03:48:26 2007344
cm-debug-clear-mallocSuccessSat Aug 18 04:15:26 2007355
cm-debug-clear-malloc7SuccessMon Aug 20 04:26:10 2007352
cm64SuccessSun Aug 19 02:41:35 200770
cm64-debugSuccessTue Aug 21 03:19:18 2007404
cm64-debug-clear-mallocSuccessThu Apr 1 11:19:58 2004170
rs6000-aix
cmSuccessWed Mar 4 01:12:03 20095
cm-debugSuccessMon Mar 2 01:26:29 200962
cm64SuccessWed Mar 4 01:11:57 20096
cm64-debugSuccessTue Mar 3 01:27:56 200966
x86_64-linux
cmSuccessSun Mar 6 00:01:13 20162
cm-debugSuccessSat Mar 5 00:02:12 20168

Testing status by file:


Html last generated: Sun Mar 6 05:51:10 2016

Input last modified: Fri Apr 13 10:38:36 2007


CMISS Help / Examples / b / b2 / b21 / b212 / b2127