Solving Monodomain in Parallel with LibMesh

Example b/b2/b21/b211/parallel-monodomain: Solving Monodomain in Parallel with LibMesh

This example shows how a monodomain problem (or reaction-diffusion) can be solved in parallel us9ing libMesh. The domain is a [0,4]^3 and an initial stimulus has been defined at the (0,0,0) corner. This example also shows how Dirichlet boundary conditions can be handled by setting the Dirichlet rows to identity and fixing the necessary columns. A simple first-order operator splitting strategy is used that is equivalent to the default strategy in CMISS.

Files used by this example are:

Name          Modified     Size

Makefile      13-Mar-2007  2.6k
SimpleCell.C  17-Nov-2006  1.4k
SimpleCell.h  17-Nov-2006  1.0k
monodomain.C  16-Mar-2007   15k

Download the entire example:

Name                                               Modified     Size

examples_b_b2_b21_b211_parallel-monodomain.tar.gz  17-Mar-2007   15k

Testing status by version:

	Status	Tested	Real time (s)
rs6000-aix
libmesh	Failure	Wed Mar 4 02:49:30 2009	49
	last break	Fri Feb 15 04:24:00 2008	84
libmesh-debug	Failure	Wed Mar 4 02:48:39 2009	62
	last break	Sat Feb 16 04:25:00 2008	82
libmesh-mp2	Failure	Wed Mar 4 02:49:47 2009	50
	last break	Sat Feb 16 04:27:00 2008	61
libmesh-mp2-debug	Failure	Wed Mar 4 02:48:51 2009	82
	last break	Wed Jan 23 02:34:00 2008	54
libmesh-mp4	Failure	Wed Mar 4 02:51:15 2009	42
	last break	Sat Feb 16 04:30:00 2008	63
libmesh-mp4-debug	Failure	Wed Mar 4 02:50:14 2009	21
	last break	Sat Feb 16 04:29:00 2008	57
x86_64-linux
libmesh	Success	Wed Mar 14 08:56:36 2007	9
libmesh-debug	Success	Wed Mar 14 08:56:46 2007	10
libmesh-mp2	Success	Wed Feb 21 02:19:38 2007	12
libmesh-mp2-debug	Success	Wed Feb 21 02:19:48 2007	9
libmesh-mp4	Success	Wed Feb 21 04:36:58 2007	9
libmesh-mp4-debug	Success	Wed Feb 21 04:37:10 2007	10

Testing status by file:

make.log

rs6000-aix
Success	libmesh:	make.log.retain.
Success	libmesh-debug:	make.log.retain.
Success	libmesh-mp2:	make.log.retain.
Success	libmesh-mp2-debug:	make.log.retain.
Success	libmesh-mp4:	make.log.retain.
Success	libmesh-mp4-debug:	make.log.retain.
x86_64-linux
Success	libmesh:	make.log.retain.
Success	libmesh-debug:	make.log.retain.
Success	libmesh-mp2:	make.log.retain.
Success	libmesh-mp2-debug:	make.log.retain.
Success	libmesh-mp4:	make.log.retain.
Success	libmesh-mp4-debug:	make.log.retain.

out_100.gmv

rs6000-aix
Failure	libmesh:	ndiff test: significant differences with generic answer.
Failure	libmesh-debug:	ndiff test: significant differences with generic answer.
Failure	libmesh-mp2:	ndiff test: significant differences with generic answer.
Failure	libmesh-mp2-debug:	ndiff test: significant differences with generic answer.
Failure	libmesh-mp4:	ndiff test: significant differences with generic answer.
Failure	libmesh-mp4-debug:	ndiff test: significant differences with generic answer.
x86_64-linux
Success	libmesh:	ndiff test: no significant differences with generic answer.
Success	libmesh-debug:	ndiff test: no significant differences with generic answer.
Success	libmesh-mp2:	ndiff test: no significant differences with generic answer.
Success	libmesh-mp2-debug:	ndiff test: no significant differences with generic answer.
Success	libmesh-mp4:	ndiff test: no significant differences with generic answer.
Success	libmesh-mp4-debug:	ndiff test: no significant differences with generic answer.

test_run.log

rs6000-aix
Success	libmesh:	test_run.log.retain.
Success	libmesh-debug:	test_run.log.retain.
Success	libmesh-mp2:	test_run.log.retain.
Success	libmesh-mp2-debug:	test_run.log.retain.
Success	libmesh-mp4:	test_run.log.retain.
Success	libmesh-mp4-debug:	test_run.log.retain.
x86_64-linux
Success	libmesh:	test_run.log.retain.
Success	libmesh-debug:	test_run.log.retain.
Success	libmesh-mp2:	test_run.log.retain.
Success	libmesh-mp2-debug:	test_run.log.retain.
Success	libmesh-mp4:	test_run.log.retain.
Success	libmesh-mp4-debug:	test_run.log.retain.

Html last generated: Sun Mar 6 05:51:10 2016

Input last modified: Fri Mar 16 12:10:23 2007

CMISS Help / Examples / b / b2 / b21 / b211 / parallel-monodomain