Example b211b: Full heart slice with VCD activation

This example solves the monodomain equation using the VCD ionic current equation on a full heart slice with fibres and anisotropy. The slice is taken at x=0 through the full 3d heart. Some nodes have been moved to reduce element skewing. Grid points are at a maximum of 0.5mm spacing and an average of about 0.3mm.


The comfile run by this example is as follows:

fem define para;r;test;example

fem define node;r;test;example
fem define base;r;test;example
fem define elem;r;test;example
fem define fibr;r;test;example
fem define elem;r;test;example fibre
fem define grid;r;test;example
fem update grid geometry
fem update grid metric
fem define equa;r;test;example
fem define mate;r;test;example
fem define cell;r;test;example
fem update grid material
fem group grid external as boundary
fem define init;r;test;example
fem define solv;r;test;example
fem solve to 0
fem define win
#uncomment for graphical output
#read com;solve;example

Additional testing commands:

fem list init
fem list solv

Files used by this example are:

Name                  Modified      Size

example_b211b.com 20-Nov-2001 574 solve.com 12-Jul-2002 943 test.ipbase 10-Apr-2000 1.5k test.ipcell 10-Apr-2000 2.3k test.ipelem 10-Apr-2000 5.4k test.ipelfb 10-Apr-2000 2.8k test.ipequa 26-May-2003 1.5k test.ipfibr 30-Jan-2001 6.8k test.ipgrid 11-Mar-2003 7.5k test.ipinit 19-Mar-2004 924 test.ipmate 19-Mar-2004 1.7k test.ipmate_cell_old 10-Apr-2000 4.0k test.ipnode 10-Apr-2000 10.0k test.ippara 12-Nov-2002 5.9k test.ipsolv 13-Apr-2007 2.2k test.ipsolv.old 10-Apr-2000 1.6k test_output.com 10-Apr-2000 28

Download the entire example:

Name                                 Modified     Size

examples_b_b2_b21_b211_b211b.tar.gz 14-Apr-2007 12k

Testing status by version:

StatusTestedReal time (s)
i686-linux
cmSuccessSun Mar 6 00:02:14 20161
cm-debugSuccessSat Mar 5 00:11:54 20164
mips-irix
cmSuccessSun Aug 19 01:43:15 200712
cm-debugSuccessWed Aug 15 01:43:33 200743
cm-debug-clear-mallocSuccessSat Aug 18 01:51:53 200749
cm-debug-clear-malloc7SuccessMon Aug 20 01:48:53 200750
cm64SuccessSun Aug 19 01:44:15 200712
cm64-debugSuccessTue Aug 21 01:42:07 200744
cm64-debug-clear-mallocSuccessThu Apr 1 11:11:37 200421
rs6000-aix
cmSuccessWed Mar 4 01:09:01 20092
cm-debugSuccessMon Mar 2 01:11:34 200912
cm64SuccessWed Mar 4 01:09:12 20092
cm64-debugSuccessTue Mar 3 01:16:38 200913
x86_64-linux
cmSuccessSun Mar 6 00:01:05 20161
cm-debugSuccessSat Mar 5 00:01:43 20161

Testing status by file:


Html last generated: Sun Mar 6 05:51:07 2016

Input last modified: Fri Apr 13 10:37:52 2007


CMISS Help / Examples / b / b2 / b21 / b211 / b211b