1D to 2D matrices.

Example b16: 1D to 2D matrices.

Tests reading in 1-D matrix and copying onto a 2-D sheet.

The comfile run by this example is as follows:

# Reads in a solution matrix (YQS) from a one dimensional fibre simulation
# and copies the 1-D fibre onto the rows of grid points in a two dimensional
# sheet.

#set the problem size
fem define para;r;spiral;example

#set up the 2-D sheet
fem define base;r;spiral;example
fem define mesh;r;spiral;example

#Export the mesh
fem export node;spiral as sheet
fem export elem;spiral as sheet

#define the FD grid
fem define grid;r;spiral;example
fem update grid geometry
fem update grid metric
fem group grid external as boundary
fem group grid xi1 low as stimulus oneoff
fem group grid square 1117 as S2

#define an ionic current model
fem define equa;r;spiral;example

#define material parameters
fem define cell;r;try_IKrblocked_S1;example
fem define mate;r;spiral_epi_M_endoS1;example cell
fem define mate;r;spiral_epi_M_endo;example
fem update grid material

#set initial conditions
fem define init;r;spiral;example

#define the solve
fem define solv;r;spiral_adaptive;example

#set the number of threads for multiprocessing
# not for examples rgb set num_threads 32

#export the cellular material parameters
fem export elem;cell_parameters field cell as sheet

#initialise the solve
### Cannot solve without the user cell model
#fem solve to 0

#read in the 1-D matrix and spread over the 2-D sheet
fem read matrix;$example."test_Ikrblocked_10beats" binary one2two

#export the potential field
fem export elem;potential field as sheet

Additional testing commands:

#write out the 2-d matrix
fem write matrix;2d_matrix matrices yq,yqs binary

#list some grid points
fem list grid grid 100..150

Files used by this example are:

Name                               Modified     Size

example_b16.com                    14-Oct-2002  1.4k
spiral.exelem                      10-Apr-2000   51k
spiral.exnode                      10-Apr-2000   14k
spiral.ipbase                      10-Apr-2000  1.1k
spiral.ipequa                      26-May-2003  1.5k
spiral.ipgrid                      06-Mar-2003  541 
spiral.ipinit                      10-Apr-2000  217 
spiral.ipmesh                      10-Apr-2000  770 
spiral.ippara                      12-Nov-2002  5.9k
spiral_adaptive.ipsolv             03-Oct-2001  1.4k
spiral_adaptive.ipsolv.old         10-Apr-2000  1.3k
spiral_epi_M_endo.ipcell           10-Apr-2000  1.7k
spiral_epi_M_endo.ipmate           10-Apr-2000  2.9k
spiral_epi_M_endo.ipmate_cell_old  10-Apr-2000  3.5k
spiral_epi_M_endoS1.ipmatc         03-Feb-2003  5.3k
test_Ikrblocked_10beats.binmat     10-Apr-2000   63k
test_output.com                    11-Oct-2002  128 
try_IKrblocked_S1.ipcell           10-Apr-2000  4.1k

Download the entire example:

Name                      Modified     Size

examples_b_b1_b16.tar.gz  19-Aug-2006  575k

Testing status by version:

	Status	Tested	Real time (s)
i686-linux
cm	Success	Sun Mar 6 00:03:45 2016	3
cm-debug	Failure	Sun Mar 6 00:06:57 2016	0
	last break	Fri Apr 15 00:17:00 2011	1
	last success	Thu Apr 7 00:34:00 2011	11
mips-irix
cm	Success	Sun Aug 19 01:58:45 2007	28
cm-debug	Success	Wed Aug 15 01:47:28 2007	49
cm-debug-clear-malloc	Success	Sat Aug 18 02:15:49 2007	86
cm-debug-clear-malloc7	Success	Mon Aug 20 02:10:43 2007	89
cm64	Success	Sun Aug 19 01:58:51 2007	29
cm64-debug	Success	Tue Aug 21 01:47:14 2007	52
cm64-debug-clear-malloc	Success	Thu Apr 1 11:10:39 2004	28
rs6000-aix
cm	Success	Wed Mar 4 01:10:52 2009	3
cm-debug	Success	Mon Mar 2 01:11:20 2009	11
cm64	Success	Wed Mar 4 01:10:46 2009	4
cm64-debug	Success	Tue Mar 3 01:15:53 2009	12
x86_64-linux
cm	Success	Sun Mar 6 00:01:10 2016	2
cm-debug	Success	Sat Mar 5 00:01:50 2016	3

Testing status by file:

signal

i686-linux

SIGABRT cm-debug: exit due to SIGABRT signal.

cmiss_test.log

i686-linux
Success	cm:	cmiss_test.log.retain.
Success	cm-debug:	cmiss_test.log.retain.
mips-irix
Success	cm:	cmiss_test.log.retain.
Success	cm-debug:	cmiss_test.log.retain.
Success	cm-debug-clear-malloc:	cmiss_test.log.retain.
Success	cm-debug-clear-malloc7:	cmiss_test.log.retain.
Success	cm64:	cmiss_test.log.retain.
Success	cm64-debug:	cmiss_test.log.retain.
Success	cm64-debug-clear-malloc:	cmiss_test.log.retain.
rs6000-aix
Success	cm:	cmiss_test.log.retain.
Success	cm-debug:	cmiss_test.log.retain.
Success	cm64:	cmiss_test.log.retain.
Success	cm64-debug:	cmiss_test.log.retain.
x86_64-linux
Success	cm:	cmiss_test.log.retain.
Success	cm-debug:	cmiss_test.log.retain.

cmiss_test.out

i686-linux
Success	cm:	ndiff test: no significant differences with generic answer.
Missing	cm-debug:	output file not generated for ndiff; generic answer.
mips-irix
Success	cm:	ndiff test: no significant differences with generic answer.
Success	cm-debug:	ndiff test: no significant differences with generic answer.
Success	cm-debug-clear-malloc:	ndiff test: no significant differences with generic answer.
Success	cm-debug-clear-malloc7:	ndiff test: no significant differences with generic answer.
Success	cm64:	ndiff test: no significant differences with generic answer.
Success	cm64-debug:	ndiff test: no significant differences with generic answer.
Success	cm64-debug-clear-malloc:	ndiff test: no significant differences with generic answer.
rs6000-aix
Success	cm:	ndiff test: no significant differences with generic answer.
Success	cm-debug:	ndiff test: no significant differences with generic answer.
Success	cm64:	ndiff test: no significant differences with generic answer.
Success	cm64-debug:	ndiff test: no significant differences with generic answer.
x86_64-linux
Success	cm:	ndiff test: no significant differences with generic answer.
Success	cm-debug:	ndiff test: no significant differences with generic answer.

cell_parameters.exelem

i686-linux
Success	cm:	ndiff test: no significant differences with generic answer.
Missing	cm-debug:	output file not generated for ndiff; generic answer.
mips-irix
Success	cm:	ndiff test: no significant differences with generic answer.
Success	cm-debug:	ndiff test: no significant differences with generic answer.
Success	cm-debug-clear-malloc:	ndiff test: no significant differences with generic answer.
Success	cm-debug-clear-malloc7:	ndiff test: no significant differences with generic answer.
Success	cm64:	ndiff test: no significant differences with generic answer.
Success	cm64-debug:	ndiff test: no significant differences with generic answer.
Success	cm64-debug-clear-malloc:	ndiff test: no significant differences with generic answer.
rs6000-aix
Success	cm:	ndiff test: no significant differences with generic answer.
Success	cm-debug:	ndiff test: no significant differences with generic answer.
Success	cm64:	ndiff test: no significant differences with generic answer.
Success	cm64-debug:	ndiff test: no significant differences with generic answer.
x86_64-linux
Success	cm:	ndiff test: no significant differences with generic answer.
Success	cm-debug:	ndiff test: no significant differences with generic answer.

potential.exelem

i686-linux
Success	cm:	ndiff test: no significant differences with generic answer.
Missing	cm-debug:	output file not generated for ndiff; generic answer.
mips-irix
Success	cm:	ndiff test: no significant differences with generic answer.
Success	cm-debug:	ndiff test: no significant differences with generic answer.
Success	cm-debug-clear-malloc:	ndiff test: no significant differences with generic answer.
Success	cm-debug-clear-malloc7:	ndiff test: no significant differences with generic answer.
Success	cm64:	ndiff test: no significant differences with generic answer.
Success	cm64-debug:	ndiff test: no significant differences with generic answer.
Success	cm64-debug-clear-malloc:	ndiff test: no significant differences with generic answer.
rs6000-aix
Success	cm:	ndiff test: no significant differences with generic answer.
Success	cm-debug:	ndiff test: no significant differences with generic answer.
Success	cm64:	ndiff test: no significant differences with generic answer.
Success	cm64-debug:	ndiff test: no significant differences with generic answer.
x86_64-linux
Success	cm:	ndiff test: no significant differences with generic answer.
Success	cm-debug:	ndiff test: no significant differences with generic answer.

Html last generated: Sun Mar 6 05:51:06 2016

Input last modified: Mon May 26 18:05:36 2003

CMISS Help / Examples / b / b1 / b16

i686-linux
SIGABRT	cm-debug:	exit due to SIGABRT signal.