#Example_2211 Fitting heart fibres
#Note: This example is to give an overview of the fibre fitting procedure only
#Do not run this as it stands because CMISS must be exited after each com file.
# epicardial fibre field
# endocardial fibre field
# mesh
# refined mesh
# allows you to check the cross sections
# the heart wall
FILES
Command files:
h00_ep .com is command file for fitting epicardial coords (h00_ep.ipnod)
h00_ep_f.com " " " " " " fibres "
h01_ep .com " " " " " " coords (h01_ep.ipnod)
h01_ep_f.com " " " " " " fibres "
h01_ep_e.com " " " " " " electrode timing data
h00_lv .com is command file for fitting lv endo coords (h00_lv.ipnod)
h00_lv_f.com " " " " " " fibres "
h01_lv .com " " " " " " coords (h01_lv.ipnod)
h01_lv_f.com " " " " " " fibres "
h00_rf .com is command file for finding rv free Xi coords (h00_rf.ipnod)
h00_rf_f.com " " " " " " fibres "
h01_rf .com " " " " " " coords (h01_rf.ipnod)
h01_rf_f.com " " " " " " fibres "
h00_rs .com is command file for finding rv sept Xi coords (h00_rs.ipnod)
h00_rs_f.com " " " " " " fibres "
h01_rs .com " " " " " " coords (h01_rs.ipnod)
h01_rs_f.com " " " " " " fibres "
h00_rv .com is command file for fitting rv endo coords (h00_rv.ipnod)
h00_rv_f.com " " " " " " fibres "
h01_rv .com " " " " " " coords (h01_rv.ipnod)
h01_rv_f.com " " " " " " fibres "
Surface geometry and fibre files:
here 3 9
# Command updated by fixcom.sh on Wed Aug 23 17:48:07 NZT 2000
# Old command: h00 .ipcoor is epicardial coordinate information
h00 .ipcoor is epicardial coordinate insprintf("%no",)
h00_ep .ipbase " " basis functions
h00_ep .ipelem " " element topology
h00_ep .ipnode " " nodal coords (lamda=1, mu=120,90,45,0)
h01_ep .ipnode " " nodal coords (lamda=1, mu=120,60,30,0)
h00_ep .ipfit " " fitting parameters for geometry
h00_ep .ipfibr " " fibre angles (=0)
h00_ep_f.ipfit " " fitting parameters for fibre field
here 3 9
# Command updated by fixcom.sh on Wed Aug 23 17:48:07 NZT 2000
# Old command: h00 .ipcoor is lv endocardial coordinate information
h00 .ipcoor is lv endocardial coordinate insprintf("%no",)
h00_ep .ipbase " " basis functions
h00_lv .ipelem " " element topology
h00_lv .ipnode " " nodal coords (lamda=1, mu=120,90,45,0)
h01_lv .ipnode " " nodal coords (lamda=1, mu=120,60,30,0)
h00_lv .ipfit " " fitting parameters for geometry
h00_lv .ipfibr " " fibre angles (=0)
h00_lv_f.ipfit " " fitting parameters for fibre field
here 3 9
# Command updated by fixcom.sh on Wed Aug 23 17:48:07 NZT 2000
# Old command: h00 .ipcoor is rv endo free wall coordinate information
h00 .ipcoor is rv endo free wall coordinate insprintf("%no",)
h00_ep .ipbase " " basis functions
h00_rf .ipelem " " element topology
h00_rf .ipnode " " nodal coords (lamda=1, mu=120,90,45,0)
h01_rf .ipnode " " nodal coords (lamda=1, mu=120,60,30,0)
h00_rf .ipfit " " fitting parameters for geometry
h00_rf .ipfibr " " fibre angles (=0)
h00_rf_f.ipfit " " fitting parameters for fibre field
here 3 9
# Command updated by fixcom.sh on Wed Aug 23 17:48:07 NZT 2000
# Old command: h00 .ipcoor is rv endo septal wall coordinate information
h00 .ipcoor is rv endo septal wall coordinate insprintf("%no",)
h00_ep .ipbase " " basis functions
h00_rs .ipelem " " element topology
h00_rs .ipnode " " nodal coords (lamda=1, mu=120,90,45,0)
h01_rs .ipnode " " nodal coords (lamda=1, mu=120,60,30,0)
h00_rs .ipfit " " fitting parameters for geometry
h00_rs .ipfibr " " fibre angles (=0)
h00_rs_f.ipfit " " fitting parameters for fibre field
Thickwall geometry and fibre files:
here 3 9
# Command updated by fixcom.sh on Wed Aug 23 17:48:07 NZT 2000
# Old command: h00 .ipcoor is myocardial coordinate information
h00 .ipcoor is myocardial coordinate insprintf("%no",)
h00_my .ipbase " " basis functions
h00_my .ipelem " " element topology
h00_my .ipnode " " nodal coordinates
h00_my .ipfibr " " fibre angles (=0)
h00_my_f.ipfit " " fitting parameters for fibre field
Files for a particular heart:
h##.data is unprocessed complete set of data points for heart h##
h##_ep .ipdata is epicardial surface data points
h##_ep .ipnode " " nodal coordinates (fitted)
h##_ep_f.ipdata " " fibre angle data
h##_ep .ipfibr " " fibre angles at nodes (fitted)
h##_ep_e.ipdata " " electrode position and timing data
h##_lv .ipdata is lv endocardial surface data points
h##_lv .ipnode " " nodal coordinates (fitted)
h##_lv_f.ipdata " " fibre angle data
h##_lv .ipfibr " " fibre angles at nodes (fitted)
h##_rf .ipdata is rv free wall endocardial surface data points
h##_rf .ipnode " " nodal coordinates (fitted)
h##_rf_f.ipdata " " endocardial fibre angle data
h##_rf .ipfibr " " endo fibre angles at nodes (fitted)
h##_rs .ipdata is rv septal wall endocardial surface data points
h##_rs .ipnode " " nodal coordinates (fitted)
h##_rs_f.ipdata " " endocardial fibre angle data
h##_rs .ipfibr " " endo fibre angles at nodes (fitted)
h##_my .ipnode is myocardial nodal coordinates
h##_my_f.ipdata " " fibre angle data
h##_my .ipfibr " " fibre angles
h##_co .ipdata is coronary vessel coordinate data
h##_va .ipdata is valve ring coordinate data
h##_my_e_001.ipdata is myocardial plunge electrode 001 position data
h##_my_e_001_1.ipdata is position 1 myoc plunge electrode 001 position data
FILES
fem quit
Name Modified Size
example_2211.com 24-Aug-2000 14k
Name Modified Size
examples_2_22_221_2211.tar.gz 19-Aug-2006 2.1k
Html last generated: Sun Mar 6 05:50:11 2016
Input last modified: Thu Aug 24 19:25:20 2000